diff --git a/BUILD.bazel b/BUILD.bazel
index 8d54e02521..41fbb03aeb 100644
--- a/BUILD.bazel
+++ b/BUILD.bazel
@@ -14,6 +14,8 @@
 load("@gazelle//:def.bzl", "gazelle")
 load("@rules_license//rules:license.bzl", "license")
 
+package(default_applicable_licenses = [":license"])
+
 # Expose license for external usage through bazel.
 licenses(["notice"])
 
@@ -26,10 +28,6 @@ license(
     license_text = ":LICENSE",
 )
 
-package(
-    default_applicable_licenses = [":license"],
-)
-
 # gazelle:build_file_name BUILD,BUILD.bazel
 # gazelle:prefix github.com/google/or-tools
 # gazelle:proto disable
diff --git a/MODULE.bazel b/MODULE.bazel
index 37d12cf5f8..14d5ce34b9 100644
--- a/MODULE.bazel
+++ b/MODULE.bazel
@@ -63,7 +63,7 @@ git_override(
     module_name = "pybind11_bazel",
     commit = "2b6082a4d9d163a52299718113fa41e4b7978db5",
     patch_strip = 1,
-    patches = ["//patches:pybind11_bazel.patch"],
+    patches = ["//:patches/pybind11_bazel.patch"],
     remote = "https://github.com/pybind/pybind11_bazel.git",
 )
 
@@ -71,7 +71,7 @@ git_override(
     module_name = "pybind11_abseil",
     commit = "70f8b693b3b70573ca785ef62d9f48054f45d786",
     patch_strip = 1,
-    patches = ["//patches:pybind11_abseil.patch"],
+    patches = ["//:patches/pybind11_abseil.patch"],
     remote = "https://github.com/pybind/pybind11_abseil.git",
 )
 
diff --git a/ortools/flatzinc/parser.tab.cc b/ortools/flatzinc/parser.tab.cc
index 137185a3c1..b568fb957e 100644
--- a/ortools/flatzinc/parser.tab.cc
+++ b/ortools/flatzinc/parser.tab.cc
@@ -2520,7 +2520,7 @@ yyreduce:
 #line 2549 "parser.tab.cc"
     break;
 
-#line 2553 "parser.tab.cc"
+#line 2555 "parser.tab.cc"
 
     default:
       break;
diff --git a/ortools/graph/BUILD.bazel b/ortools/graph/BUILD.bazel
index 08b18b6710..1de87e6152 100644
--- a/ortools/graph/BUILD.bazel
+++ b/ortools/graph/BUILD.bazel
@@ -470,7 +470,7 @@ cc_library(
 cc_test(
     name = "max_flow_test",
     srcs = ["max_flow_test.cc"],
-    data = ["//ortools/graph/testdata:max_flow_test1.pb.txt"],
+    data = ["//ortools/graph:testdata/max_flow_test1.pb.txt"],
     deps = [
         ":flow_problem_cc_proto",
         ":max_flow",
diff --git a/ortools/graph/testdata/BUILD.bazel b/ortools/graph/testdata/BUILD.bazel
deleted file mode 100644
index ceb56230d2..0000000000
--- a/ortools/graph/testdata/BUILD.bazel
+++ /dev/null
@@ -1,16 +0,0 @@
-# Copyright 2010-2025 Google LLC
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-exports_files([
-    "max_flow_test1.pb.txt",
-])
diff --git a/patches/BUILD.bazel b/patches/BUILD.bazel
deleted file mode 100644
index f58fc9c0ef..0000000000
--- a/patches/BUILD.bazel
+++ /dev/null
@@ -1,17 +0,0 @@
-# Copyright 2010-2025 Google LLC
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-exports_files([
-    "pybind11_bazel.patch",
-    "pybind11_abseil.patch",
-])